Publications
My broad interests include systems and network modeling focusing on biophysical systems, machine learning (ML) applications, and HCI. I am also interested in statistical signal processing (SSP), particularly in estimation and detection theory.
Journals
Md. Shahriar Karim, Aasakiran Madamanchi, James A. Dutko, Mary C. Mullins, David M. Umulis, Heterodimer-heterotetramer formation mediates enhanced sensor activity in a biophysical model for BMP signaling, PLOS Computational Biology, September 30, 2021. doi 10.1371/journal.pcbi.1009422
Md. Shahriar Karim, Gregery T. Buzzard, David M. Umulis, Efficient calculation of steady state probability distribution for stochastic biochemical reaction network, BMC Genomics volume 13, Article number: S10 (2012), October 26, 2012.
Md. Shahriar Karim, Gregery T. Buzzard, David M. Umulis, Secreted, receptor-associated BMP regulators reduce stochastic noise intrinsic to many extracellular morphogen distributions., Journal of the Royal Soc. Interface, 2012 May 7;9(70):1073-83. doi: 10.1098/rsif.2011.0547.
Working Manuscripts
Stochastic Analysis of BMP-receptor Oligomerization during embryogenesis [Area: Systems Biology]
Network motifs for scaling in morphogen-mediated patterning [Area: Systems Biology]
Estimation of Poisson Event Rate Using Poisson Distributed Random Observers for Sensing Applications [Area: Estimation Theory]
Conferences
Muhtasim Ishmum Khan, Moshiur Rahman, Md. Shahriar Karim, Development of A Molecular Exchange Mechanism-based Biomolecular Neural Network, Published at the GEM workshop, ICLR 2024.
Moshiur Rahman, Muhtasim Ishmum Khan, Md. Shahriar Karim, Design of a molecular exchange-based robust perceptron for biomolecular neural network, Publisehd at the The Second Tiny Papers Track at ICLR 2024
Md. Rakibur Rahman, Md. Mafri Chowdhury, Md. Shohanur Rahaman Sarkar, Md. Shahriar Karim, A Multichannel Localization Method For Camouflaged Object Detection, ICIP 2023.
Syed Mustavi Maheen, Moshiur Rahman Faisal, Md. Rafakat Rahman and Md. Shahriar Karim, Alternative non-BERT model choices for the textual classification in low-resource languages and environments, The third edition of Deep Learning for Low-Resource NLP, 2022, collocated with NAACL 2022.
Md. Shahriar Karim, Hans G. Othmer, David M. Umulis, Leveraging compute clusters for large-scale parametric screens of reaction-diffusion systems, The 26th conference on Parallel, Distributed, and Network-Based Processing (PDP 2018), March 21-23, Cambridge, UK, 2018.
Md. Shahriar Karim, Gregery T. Buzzard, David M. Umulis, Steady state probability approximation applied to stochastic model of biological network, IEEE International Workshop on Genomic Signal Processing and Statistic, December 4-6, 2011, San Antonio, Texas, USA, 2011
Md. Shahriar Karim, Gregery T. Buzzard, David M. Umulis, Modulation of Morphogen Dynamics Can Lead to Robustness and Scaling of Patterns in Development, The 36th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC’14), August 26-30, 2014 Chicago, Illinois, USA, 2014.
Presentation and Posters
To be updated.
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